Motif HL_53837.2 Version HL_53837.2 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_089 | 6CZR | 0.4710 | 2 | 1a | SSU rRNA | G | 822 | C | 824 | C | 826 | cWW | |
| 2 | HL_4V9F_021 | 4V9F | 0.4837 | 2 | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW | |
| 3 | HL_8C3A_072 | 8C3A | 0.3999 | 1 | 1 | LSU rRNA | C | 3315 | U | 3317 | G | 3318 | cWW | |
| 4 | HL_5J7L_169 | 5J7L | 0.4433 | 6 | DA | LSU rRNA | C | 1451 | U | 1458 | G | 1459 | cWW | |
| 5 | HL_4L8H_001 | 4L8H | 0.4861 | 2 | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW | |
| 6 | HL_4V88_192 | 4V88 | 0.5169 | 1 | A6 | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW | |
| 7 | HL_7A0S_017 | 7A0S | 0.4595 | 3 | X | LSU rRNA | C | 553 | U | 557 | G | 558 | cWW | |
| 8 | HL_5U30_001 | 5U30 | 0.3428 | 1 | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW | |
| 9 | HL_5TBW_071 | 5TBW | 0.3597 | 1 | 1 | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW | |
| 10 | HL_4WF9_037 | 4WF9 | 0.0000 | 1 | X | LSU rRNA | C | 1612 | A | 1614 | G | 1615 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 3 |
| GUCUC | 1 |
| CUUUG | 1 |
| CGACGGUUG | 1 |
| CUAAG | 1 |
| CUUAUG | 1 |
| UAGA | 1 |
| CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 3 |
| UCU | 1 |
| UUU | 1 |
| GACGGUU | 1 |
| UAA | 1 |
| UUAU | 1 |
| AG | 1 |
| GA | 1 |
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