Motif HL_54751.1 Version HL_54751.1 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3QSY_003 | 3QSY | 0.8717 | 1 | D | C | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | C | 62 | G | 63 | cWW | ncWW | ncWW | |
| 2 | HL_2XZM_030 | 2XZM | 0.0000 | 0 | A | G | 1364 | U | 1365 | G | 1366 | C | 1367 | A | 1368 | A | 1369 | U | 1370 | A | 1371 | A | 1372 | G | 1373 | C | 1374 | C | 1375 | cWW | tSH | ||
| 3 | HL_1FJG_023 | 1FJG | 0.6772 | 0 | A | C | 1027 | C | 1028 | C | 1029 | C | 1030 | G | 1030|||A | C | 1030|||B | G | 1030|||C | A | 1030|||D | G | 1031 | G | 1032 | G | 1033 | G | 1034 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUUCAAAUCCG | 1 |
| GUGCAAUAAGCC | 1 |
| CCCCGCGAGGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUCAAAUCC | 1 |
| UGCAAUAAGC | 1 |
| CCCGCGAGGG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_54751.1 | Only in the parent motif |
|---|---|---|---|
| HL_22711.1 Compare | HL_1FJG_023 | HL_2XZM_030, HL_3QSY_003 | |
| HL_79880.1 Compare | HL_2XZM_030 | HL_1FJG_023, HL_3QSY_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_54751.1 | Only in the child motif |
|---|---|---|---|
| HL_54751.2 Compare | HL_1FJG_023, HL_3QSY_003 | HL_2XZM_030 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.68 | Avg 0.56 | Max 0.95
Coloring options: