Motif HL_55829.1 Version HL_55829.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_029 | 3J9W | 0.3905 | 0 | T-loop with 3 stacked bulged bases (H) | AA | SSU rRNA | C | 1323 | U | 1324 | G | 1325 | C | 1326 | A | 1327 | A | 1328 | C | 1329 | U | 1330 | C | 1331 | G | 1332 | cWW | tWH |
| 2 | HL_4V4Q_132 | 4V4Q | 0.0000 | 0 | T-loop with 3 stacked bulged bases (H) | CA | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | C | 1322 | G | 1323 | cWW | tWH |
| 3 | HL_1FJG_029 | 1FJG | 0.1790 | 0 | T-loop with 3 stacked bulged bases (H) | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | C | 1322 | G | 1323 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACUCG | 2 |
| CUGCAACCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACUC | 2 |
| UGCAACCC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with 3 stacked bulged bases (H) (3)
- Basepair signature
- cWW-R-R-R-tWH-R-R-R
- Heat map statistics
- Min 0.18 | Avg 0.21 | Max 0.39
Coloring options: