Motif HL_56490.1 Version HL_56490.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_135 | 4V88 | 0.6535 | 2 | Externally structured (H) | A5 | LSU rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
| 2 | HL_4V91_022 | 4V91 | 0.4707 | 2 | Externally structured (H) | 1 | LSU rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
| 3 | HL_5AJ0_025 | 5AJ0 | 0.3982 | 2 | Externally structured (H) | A2 | LSU rRNA | C | 1657 | U | 1659 | C | 1660 | G | 1662 | cWW |
| 4 | HL_3J7P_022 | 3J7P | 0.3812 | 2 | Externally structured (H) | 5 | LSU rRNA | C | 1675 | U | 1677 | C | 1678 | G | 1680 | cWW |
| 5 | HL_4V8P_183 | 4V8P | 0.2728 | 2 | Externally structured (H) | F1 | LSU rRNA | U | 983 | U | 985 | C | 986 | G | 988 | cWW |
| 6 | HL_3J79_023 | 3J79 | 0.0000 | 2 | Externally structured (H) | A | LSU rRNA | U | 1077 | U | 1079 | C | 1080 | G | 1082 | cWW |
| 7 | HL_3J7Y_011 | 3J7Y | 0.3184 | 2 | A | LSU rRNA | U | 2035 | U | 2037 | U | 2038 | G | 2040 | cWW | |
| 8 | HL_5FDU_024 | 5FDU | 0.3305 | 2 | 1A | LSU rRNA | U | 873 | U | 875 | A | 876 | G | 878 | cWW | |
| 9 | HL_5J7L_157 | 5J7L | 0.3528 | 2 | DA | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 10 | HL_3J9W_060 | 3J9W | 0.3521 | 2 | BA | LSU rRNA | U | 873 | U | 875 | A | 876 | G | 878 | cWW | |
| 11 | HL_4IOA_024 | 4IOA | 0.7880 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 12 | HL_4V9F_026 | 4V9F | 0.8204 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 13 | HL_4V19_010 | 4V19 | 1.0430 | 2 | A | LSU rRNA | U | 371 | U | 373 | U | 374 | G | 376 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCAG | 4 |
| UUUAGG | 3 |
| UCUCAG | 2 |
| UCUUAG | 1 |
| UUGAGG | 1 |
| UCGAAG | 1 |
| UUUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 6 |
| UUAG | 3 |
| CUUA | 1 |
| UGAG | 1 |
| CGAA | 1 |
| UUUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Externally structured (H) (6)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.08 | Avg 0.60 | Max 1.16
Coloring options: