Motif HL_57904.1 Version HL_57904.1 of this group appears in releases 0.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QU2_002 | 1QU2 | 0.0000 | 3 | T | tRNA | C | 31 | C | 32 | U | 33 | U | 36 | A | 38 | G | 39 | cWW | ncWW | ntSW |
| 2 | HL_2XZM_017 | 2XZM | 0.7369 | 3 | A | 18S RRNA | G | 759 | G | 760 | U | 761 | U | 764 | G | 766 | C | 767 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAUAAG | 1 |
| GGUUUUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAUAA | 1 |
| GUUUUAG | 1 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_57904.1 | Only in the child motif |
|---|---|---|---|
| HL_73972.1 Compare | HL_1QU2_002 | HL_2XZM_017 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.74 | Avg 0.37 | Max 0.74
Coloring options: