Motif HL_59843.1 Version HL_59843.1 of this group appears in releases 3.98 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9C2K_001 | 9C2K | 0.0000 | 1 | C | Rev Response Element | U | 19 | C | 20 | A | 21 | A | 22 | G | 24 | A | 25 | ncWW | ntWW |
| 2 | HL_1F1T_001 | 1F1T | 0.9553 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAUGA | 1 |
| CGAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAUG | 1 |
| GAGA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: