Motif HL_60809.1 Version HL_60809.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-5 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SUX_003 | 3SUX | 0.0000 | 1 | X | THF riboswitch | A | 38||||17_555 | C | 39||||17_555 | G | 41||||17_555 | G | 42||||17_555 | G | 43||||17_555 | A | 44||||17_555 | G | 45||||17_555 | U | 46||||17_555 | U | 47||||17_555 | ncWW | ncWW | ||
| 2 | HL_3SUX_001 | 3SUX | 0.0000 | 1 | X | THF riboswitch | A | 38 | C | 39 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW | ||
| 3 | HL_3D0U_002 | 3D0U | 0.9342 | 0 | Pseudoknot geometry | A | Lysine Riboswitch RNA | U | 90 | U | 91 | C | 92 | C | 93 | U | 94 | C | 95 | C | 96 | C | 97 | G | 98 | cWW | ||
| 4 | HL_3DIR_002 | 3DIR | 0.9510 | 0 | A | RNA (174-MER) | U | 93 | U | 94 | C | 95 | C | 96 | U | 97 | C | 98 | C | 99 | C | 100 | G | 101 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGGGGAGUU | 2 |
| UUCCUCCCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGGAGU | 2 |
| UCCUCCC | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-cWW-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.49 | Max 0.95
Coloring options: