Motif HL_61425.1 Version HL_61425.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_044 | 3J9W | 0.5376 | 0 | BA | LSU rRNA | G | 283 | C | 284 | U | 285 | U | 286 | G | 287 | C | 288 | cWW | ncSH |
| 2 | HL_2A64_001 | 2A64 | 0.4985 | 0 | A | ribonuclease P RNA | G | 31 | G | 32 | U | 33 | U | 34 | U | 35 | C | 36 | cWW | |
| 3 | HL_3DHS_001 | 3DHS | 0.0000 | 0 | A | RNase P RNA | G | 31 | G | 32 | U | 33 | U | 34 | U | 35 | C | 36 | cWW | ncSH |
| 4 | HL_3J9W_004 | 3J9W | 0.8561 | 0 | AA | SSU rRNA | C | 192 | G | 193 | C | 194 | A | 195 | U | 196 | G | 197 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUUC | 2 |
| GCUUGC | 1 |
| CGCAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUU | 2 |
| CUUG | 1 |
| GCAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-cSH
- Heat map statistics
- Min 0.48 | Avg 0.54 | Max 0.98
Coloring options: