Motif HL_61893.1 Version HL_61893.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_153 | 5J7L | 0.7430 | 0 | DA | LSU rRNA | U | 641 | U | 642 | A | 643 | A | 644 | C | 645 | U | 646 | G | 647 | cWW | ncSH | ||
| 2 | HL_1U9S_001 | 1U9S | 0.0000 | 0 | GNRA | A | RIBONUCLEASE P | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | G | 89 | C | 90 | cWW | ||
| 3 | HL_3P49_002 | 3P49 | 0.4436 | 0 | A | Glycine riboswitch | G | 41 | U | 42 | A | 43 | A | 44 | A | 45 | U | 46 | C | 47 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAACUG | 1 |
| GUAACGC | 1 |
| GUAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACU | 1 |
| UAACG | 1 |
| UAAAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- GNRA (1)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.44 | Avg 0.44 | Max 0.79
Coloring options: