Motif HL_63699.2 Version HL_63699.2 of this group appears in releases 3.25 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_024 | 4WF9 | 0.3693 | 2 | X | LSU rRNA | A | 824 | G | 825 | A | 827 | A | 828 | U | 830 | cWW | tSW |
| 2 | HL_4Y4O_126 | 4Y4O | 0.0893 | 2 | 2A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
| 3 | HL_4V9F_025 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW |
| 4 | HL_4IOA_023 | 4IOA | 0.5934 | 2 | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | G | 798 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAAG | 2 |
| AGAAAUU | 1 |
| UGAAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAA | 2 |
| GAAAU | 1 |
| GAAAG | 1 |
Release history
| Release | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.09 | Avg 0.34 | Max 0.72
Coloring options: