Motif HL_64365.1 Version HL_64365.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_026 | 4V9F | 0.2000 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 2 | HL_7A0S_024 | 7A0S | 0.2030 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 3 | HL_7RQB_025 | 7RQB | 0.0572 | 2 | 1A | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 4 | HL_5J7L_157 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 5 | HL_4WF9_025 | 4WF9 | 0.0700 | 2 | X | LSU rRNA | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 6 | HL_4Z7L_003 | 4Z7L | 0.8655 | 8 | I | RNA (14-mer) | C | 17 | A | 18 | A | 19 | G | 28 | cWW | |
| 7 | HL_4Z7K_001 | 4Z7K | 0.9634 | 8 | C | RNA/DNA Hybrid (31-MER) | C | 17 | A | 18 | A | 19 | G | 28 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| CAAAAUAACAAG | 2 |
| UCGAAG | 1 |
| UUGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 3 |
| AAAAUAACAA | 2 |
| CGAA | 1 |
| UGAG | 1 |
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