Motif HL_67265.2 Version HL_67265.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-8	2-9
1	HL_4V5O_036	4V5O	0.3459	1	BA	SSU rRNA	G	7	U	8	G	10	A	11	U	12	C	13	C	14	U	15	G	16	C	17	cWW	ntWH
2	HL_4V88_186	4V88	0.2575	1	A6	SSU rRNA	G	7	U	8	G	10	A	11	U	12	C	13	C	14	U	15	G	16	C	17	cWW	tHW
3	HL_4LFB_001	4LFB	0.0000	1	A	SSU rRNA	U	12	U	13	G	15	A	16	U	17	C	18	C	19	U	20	G	21	G	22	cWW	tHW
4	HL_5J7L_001	5J7L	0.1037	1	AA	SSU rRNA	U	12	U	13	G	15	A	16	U	17	C	18	A	19	U	20	G	21	G	22	cWW	tHW
5	HL_4XWF_002	4XWF	0.6375	1	A	ZMP/ZTP riboswitch	C	50	G	51	C	53	C	54	G	55	C	56	C	57	U	58	G	59	G	60	cWW
6	HL_4ZNP_002	4ZNP	0.7300	1	A	ZMP/ZTP riboswitch	C	58	G	59	C	61	C	62	G	63	C	64	C	65	U	66	G	67	G	68	cWW
7	HL_5BTP_004	5BTP	0.7464	1	B	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW
8	HL_5X6B_002	5X6B	0.6553	1	P	tRNA	G	29	A	30	U	32	G	33	C	34	A	35	G	36	A	37	U	38	C	39	cWW		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUGAUCCUGC	2
UUUGAUCCUGG	1
UUUGAUCAUGG	1
CGCCCGCCUGG	1
CGACCGCCUGG	1
CGACCGUCUGG	1
GACUGCAGAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUGAUCCUG	3
UUGAUCAUG	1
GCCCGCCUG	1
GACCGCCUG	1
GACCGUCUG	1
ACUGCAGAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-R-tHW-R-R-R-R-R
Heat map statistics: Min 0.09 | Avg 0.47 | Max 0.81

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