Motif HL_67265.2 Version HL_67265.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V5O_036 | 4V5O | 0.3459 | 1 | BA | SSU rRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | ntWH | ||
| 2 | HL_4V88_186 | 4V88 | 0.2575 | 1 | A6 | SSU rRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | ||
| 3 | HL_4LFB_001 | 4LFB | 0.0000 | 1 | A | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | ||
| 4 | HL_5J7L_001 | 5J7L | 0.1037 | 1 | AA | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | ||
| 5 | HL_4XWF_002 | 4XWF | 0.6375 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |||
| 6 | HL_4ZNP_002 | 4ZNP | 0.7300 | 1 | A | pfI Riboswitch | C | 58 | G | 59 | C | 61 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW | |||
| 7 | HL_5BTP_004 | 5BTP | 0.7464 | 1 | B | RNA (62-MER) | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | |||
| 8 | HL_5X6B_002 | 5X6B | 0.6553 | 1 | P | tRNA | G | 29 | A | 30 | U | 32 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | C | 39 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGAUCCUGC | 2 |
| UUUGAUCCUGG | 1 |
| UUUGAUCAUGG | 1 |
| CGCCCGCCUGG | 1 |
| CGACCGCCUGG | 1 |
| CGACCGUCUGG | 1 |
| GACUGCAGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 3 |
| UUGAUCAUG | 1 |
| GCCCGCCUG | 1 |
| GACCGCCUG | 1 |
| GACCGUCUG | 1 |
| ACUGCAGAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tHW-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.47 | Max 0.81
Coloring options: