Motif HL_67407.4 Version HL_67407.4 of this group appears in releases 3.96 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9
1	HL_7JRT_003	7JRT	0.3926	1	B	RNA nano bracelet	G	35	A	36	G	38	C	39	U	40	C	41	G	42	C	43	A	44	C	45	ncWW	cWw
2	HL_7JRT_001	7JRT	0.5712	1	A	RNA nano bracelet	G	35	A	36	G	38	C	39	U	40	C	41	G	42	C	43	A	44	C	45	cWW	cwW
3	HL_7JRT_002	7JRT	0.4792	1	A	RNA nano bracelet	G	102	A	103	G	105	C	106	C	107	U	108	C	109	C	110	A	111	C	112	cWW	ncBW
4	HL_7JRS_002	7JRS	0.4331	1	B	RNA 3D nanocage	G	63	A	64	G	66	C	67	A	68	G	69	G	70	C	71	A	72	C	73	cWW	ncwW
5	HL_4PJO_001	4PJO	0.3238	1	1	U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4.	G	17	A	18	G	20	U	21	G	22	C	23	A	24	C	25	A	26	C	27	cWW	ntWW
6	HL_4ZNP_002	4ZNP	0.2023	1	A	ZMP/ZTP riboswitch	C	58	G	59	C	61	C	62	G	63	C	64	C	65	U	66	G	67	G	68	cWW
7	HL_4XWF_002	4XWF	0.1542	1	A	ZMP/ZTP riboswitch	C	50	G	51	C	53	C	54	G	55	C	56	C	57	U	58	G	59	G	60	cWW
8	HL_9BZC_003	9BZC	0.0000	1	A	RNA (87-MER)	C	77	G	78	C	80	C	81	G	82	U	83	C	84	U	85	G	86	G	87	cWW
9	HL_5BTP_004	5BTP	0.4030	1	B	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAGCUCGCAC	2
CGACCGUCUGG	2
GAAGCCUCCAC	1
GAAGCAGGCAC	1
GAGGUGCACAC	1
CGACCGCCUGG	1
CGCCCGCCUGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGCUCGCA	2
GACCGUCUG	2
AAGCCUCCA	1
AAGCAGGCA	1
AGGUGCACA	1
GACCGCCUG	1
GCCCGCCUG	1

Release history

Release	3.96	3.97
Date	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.15 | Avg 0.42 | Max 0.85

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