Motif HL_67407.5 Version HL_67407.5 of this group appears in releases 3.98 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JRT_003 | 7JRT | 0.3926 | 1 | B | RNA nano bracelet | G | 35 | A | 36 | G | 38 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | ncWW | cWw |
| 2 | HL_7JRT_001 | 7JRT | 0.5712 | 1 | A | RNA nano bracelet | G | 35 | A | 36 | G | 38 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | cWW | cwW |
| 3 | HL_7JRT_002 | 7JRT | 0.4792 | 1 | A | RNA nano bracelet | G | 102 | A | 103 | G | 105 | C | 106 | C | 107 | U | 108 | C | 109 | C | 110 | A | 111 | C | 112 | cWW | ncBW |
| 4 | HL_7JRS_002 | 7JRS | 0.4331 | 1 | B | RNA 3D nanocage | G | 63 | A | 64 | G | 66 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | cWW | ncwW |
| 5 | HL_4PJO_001 | 4PJO | 0.3238 | 1 | 1 | U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. | G | 17 | A | 18 | G | 20 | U | 21 | G | 22 | C | 23 | A | 24 | C | 25 | A | 26 | C | 27 | cWW | ntWW |
| 6 | HL_8VVJ_002 | 8VVJ | 0.2197 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |
| 7 | HL_4XWF_002 | 4XWF | 0.1542 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |
| 8 | HL_9BZC_003 | 9BZC | 0.0000 | 1 | A | RNA (87-MER) | C | 77 | G | 78 | C | 80 | C | 81 | G | 82 | U | 83 | C | 84 | U | 85 | G | 86 | G | 87 | cWW | |
| 9 | HL_4ZNP_002 | 4ZNP | 0.2023 | 1 | A | ZMP/ZTP riboswitch | C | 58 | G | 59 | C | 61 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW | |
| 10 | HL_5BTP_004 | 5BTP | 0.4030 | 1 | B | ZMP/ZTP riboswitch | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCUCGCAC | 2 |
| CGCCCGCCUGG | 2 |
| CGACCGUCUGG | 2 |
| GAAGCCUCCAC | 1 |
| GAAGCAGGCAC | 1 |
| GAGGUGCACAC | 1 |
| CGACCGCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCUCGCA | 2 |
| GCCCGCCUG | 2 |
| GACCGUCUG | 2 |
| AAGCCUCCA | 1 |
| AAGCAGGCA | 1 |
| AGGUGCACA | 1 |
| GACCGCCUG | 1 |
- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.41 | Max 0.85
Coloring options: