Motif HL_68015.1 Version HL_68015.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3LA5_002 | 3LA5 | 0.1961 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 2 | HL_4LX6_002 | 4LX6 | 0.1217 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 3 | HL_1Y26_002 | 1Y26 | 0.0522 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 4 | HL_1Y27_002 | 1Y27 | 0.0000 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ||
| 5 | HL_4FE5_002 | 4FE5 | 0.0633 | 1 | B | xpt-pbuX guanine riboswitch aptamer domain | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 6 | HL_2GDI_003 | 2GDI | 0.6752 | 0 | Y | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | ntWW | |
| 7 | HL_4V4Q_117 | 4V4Q | 0.6757 | 0 | CA | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 8 | HL_1FJG_014 | 1FJG | 0.6449 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 9 | HL_3J9W_014 | 3J9W | 0.7029 | 0 | AA | SSU rRNA | G | 626 | C | 627 | U | 628 | C | 629 | A | 630 | A | 631 | C | 632 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 3 |
| GCUCAAC | 3 |
| GCUUCCAC | 2 |
| CUGCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 3 |
| CUCAA | 3 |
| CUUCCA | 2 |
| UGCGU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.05 | Avg 0.44 | Max 0.76
Coloring options: