Motif HL_68304.2 Version HL_68304.2 of this group appears in releases 3.3 to 3.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3KTW_001 | 3KTW | 0.8658 | 0 | C | SRP RNA | U | 163 | G | 164 | G | 165 | A | 166 | G | 167 | G | 168 | cWW | ||
| 2 | HL_4IOA_030 | 4IOA | 0.7788 | 0 | Other HL | X | LSU rRNA | C | 1235 | G | 1236 | G | 1237 | A | 1238 | A | 1239 | G | 1240 | cWW | |
| 3 | HL_4LFB_012 | 4LFB | 0.0000 | 1 | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH | |
| 4 | HL_5J7L_148 | 5J7L | 0.3130 | 1 | DA | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | tSH | |
| 5 | HL_5J7L_026 | 5J7L | 0.4944 | 1 | AA | SSU rRNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAGG | 1 |
| CGGAAG | 1 |
| CGACGAG | 1 |
| CGGCGAG | 1 |
| UGAUAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAG | 1 |
| GGAA | 1 |
| GACGA | 1 |
| GGCGA | 1 |
| GAUAA | 1 |
- Annotations
-
- Other HL (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.31 | Avg 0.54 | Max 0.92
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