Motif HL_71441.1 Version HL_71441.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_008 | 3J7P | 0.3467 | 2 | 5 | LSU rRNA | C | 289 | U | 290 | U | 291 | G | 292 | G | 293 | G | 294 | U | 297 | G | 298 | cwW | ncSH | |
| 2 | HL_4V8P_168 | 4V8P | 0.0000 | 2 | F1 | LSU rRNA | U | 277 | U | 278 | U | 279 | G | 280 | G | 281 | G | 282 | U | 285 | G | 286 | cWW | cwW | |
| 3 | HL_5AJ0_007 | 5AJ0 | 0.3785 | 2 | A2 | LSU rRNA | C | 283 | U | 284 | U | 285 | G | 286 | G | 287 | G | 288 | U | 291 | G | 292 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGGGAAUG | 2 |
| UUUGGGAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGAAU | 2 |
| UUGGGAUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.35 | Avg 0.25 | Max 0.38
Coloring options: