Motif HL_74465.4 Version HL_74465.4 of this group appears in releases 1.9 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1EIY_002 | 1EIY | 0.6415 | 0 | tRNA anticodon loop (H) | C | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | |
| 2 | HL_1J1U_002 | 1J1U | 0.5762 | 0 | tRNA anticodon loop | B | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW |
| 3 | HL_2AKE_002 | 2AKE | 0.3913 | 0 | tRNA anticodon loop | B | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | |
| 4 | HL_2ZNI_002 | 2ZNI | 0.3885 | 0 | C | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |
| 5 | HL_3TUP_002 | 3TUP | 0.3542 | 0 | tRNA anticodon loop | T | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | |
| 6 | HL_1U0B_002 | 1U0B | 0.2765 | 0 | tRNA anticodon loop | A | A | 31 | U | 32 | U | 33 | G | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | |
| 7 | HL_2AZX_002 | 2AZX | 0.0000 | 0 | C | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | G | 537 | A | 538 | U | 539 | cWW | ncWW | |
| 8 | HL_4MGN_007 | 4MGN | 0.2992 | 0 | D | C | 30 | U | 31 | U | 32 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | ||
| 9 | HL_3W3S_002 | 3W3S | 0.3485 | 0 | tRNA anticodon loop | B | A | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW |
| 10 | HL_2CV1_005 | 2CV1 | 0.3526 | 0 | D | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW | |
| 11 | HL_1J2B_001 | 1J2B | 0.4746 | 0 | C | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | |
| 12 | HL_1J2B_003 | 1J2B | 0.5864 | 0 | D | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUGAAAAU | 2 |
| ACUCCAGAU | 2 |
| CCUUACGAG | 2 |
| ACUGUAGAU | 1 |
| ACUCUAAAU | 1 |
| AUUGCAAAU | 1 |
| CUUGCCAAG | 1 |
| ACUUCAAAU | 1 |
| CCUCUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAAAA | 2 |
| CUCCAGA | 2 |
| CUUACGA | 2 |
| CUGUAGA | 1 |
| CUCUAAA | 1 |
| UUGCAAA | 1 |
| UUGCCAA | 1 |
| CUUCAAA | 1 |
| CUCUCAA | 1 |
Release history
| Release | 1.9 |
|---|---|
| Date | 2013-12-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_74465.4 | Only in the parent motif |
|---|---|---|---|
| HL_74465.3 Compare | HL_3W3S_002, HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_4MGN_007, HL_1J2B_001, HL_1J2B_003 | HL_3L0U_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_74465.4 | Only in the child motif |
|---|---|---|---|
| HL_74465.5 Compare | HL_3W3S_002, HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_4MGN_007, HL_1J2B_001, HL_1J2B_003 | HL_3WFS_002 |
- Annotations
-
- (6)
- tRNA anticodon loop (5)
- tRNA anticodon loop (H) (1)
- Basepair signature
- cWW-cWW-R-tSH-R-R
- Heat map statistics
- Min 0.23 | Avg 0.51 | Max 0.96
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