Motif HL_75579.6 Version HL_75579.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_006 | 1VWW | 0.4136 | 6 | 5 | 28S ribosomal RNA | C | 222 | G | 223 | G | 226 | ncWW |
| 2 | HL_1S72_011 | 1S72 | 0.2883 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW |
| 3 | HL_2QBG_012 | 2QBG | 0.2735 | 2 | B | 23S rRNA | G | 319 | A | 320 | C | 323 | cWW |
| 4 | HL_4IOA_010 | 4IOA | 0.2491 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW |
| 5 | HL_4QCN_010 | 4QCN | 0.1831 | 2 | A | 23S Ribosomal RNA | C | 343 | A | 344 | G | 347 | cWW |
| 6 | HL_1VX6_006 | 1VX6 | 0.1499 | 2 | A | 28S ribosomal RNA | C | 216 | A | 217 | G | 220 | cWW |
| 7 | HL_3U5H_006 | 3U5H | 0.0964 | 2 | 5 | 25S rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 8 | HL_4A1B_006 | 4A1B | 0.0000 | 2 | 1 | 26S RRNA | C | 208 | A | 209 | G | 212 | cWW |
| 9 | HL_4CUV_006 | 4CUV | 0.0956 | 2 | 1 | 25S RRNA | C | 208 | A | 209 | G | 212 | cWW |
| 10 | HL_4P9R_005 | 4P9R | 0.4342 | 0 | A | RNA (189-MER) | U | 346 | C | 347 | A | 542 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUAG | 3 |
| GAUAC | 2 |
| GUGUGAGGC | 1 |
| CUCAG | 1 |
| CAGAG | 1 |
| CAAAG | 1 |
| UCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 5 |
| UGUGAGG | 1 |
| UCA | 1 |
| AGA | 1 |
| AAA | 1 |
| C | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75579.6 | Only in the parent motif |
|---|---|---|---|
| HL_75579.5 Compare | HL_4A1B_006, HL_1VX6_006, HL_3U5H_006, HL_2QBG_012, HL_4P9R_005, HL_4CUV_006, HL_1S72_011, HL_1VWW_006, HL_4IOA_010 | HL_4QCN_010 | HL_4NVV_010 |
Children motifs
| Child motif | Common motif instances | Only in HL_75579.6 | Only in the child motif |
|---|---|---|---|
| HL_75579.7 Compare | HL_4QCN_010, HL_4A1B_006, HL_1VX6_006, HL_2QBG_012, HL_4P9R_005, HL_4CUV_006, HL_1S72_011, HL_3U5H_006, HL_4IOA_010 | HL_1VWW_006 | HL_4W21_006 |
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