Motif HL_76406.2 Version HL_76406.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_056 | 5TBW | 0.3991 | 0 | 1 | LSU rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH | |
| 2 | HL_4V8P_139 | 4V8P | 0.0000 | 0 | D1 | LSU rRNA | A | 2662 | A | 2663 | C | 2664 | G | 2665 | G | 2666 | A | 2667 | A | 2668 | A | 2669 | U | 2670 | cWW | ntHH | |
| 3 | HL_4V9F_057 | 4V9F | 0.2762 | 0 | 0 | LSU rRNA | G | 2338 | A | 2339 | C | 2340 | A | 2341 | G | 2342 | A | 2343 | G | 2344 | A | 2345 | C | 2346 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 1 |
| AACGGAAAU | 1 |
| GACAGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 1 |
| ACGGAAA | 1 |
| ACAGAGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWH-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.24 | Max 0.41
Coloring options: