Motif HL_77169.1 Version HL_77169.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_196 | 8C3A | 0.3965 | 2 | CM | SSU rRNA | C | 228 | U | 229 | G | 232 | G | 233 | cWW | tSWa |
| 2 | HL_8C3A_034 | 8C3A | 0.0000 | 4 | 1 | LSU rRNA | G | 1562 | A | 1563 | U | 1568 | C | 1569 | cWW | |
| 3 | HL_8H9D_001 | 8H9D | 0.8536 | 3 | G | RNA (21-mer) | C | 11 | U | 12 | G | 15 | G | 17 | cWW | |
| 4 | HL_5ID6_001 | 5ID6 | 0.8742 | 3 | G | RNA (21-mer) | C | 11 | U | 12 | G | 15 | G | 17 | cWW | |
| 5 | HL_5XUZ_001 | 5XUZ | 0.8653 | 3 | B | crRNA | C | -12 | U | -11 | G | -8 | G | -6 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAGUG | 3 |
| CUUCGG | 1 |
| GAUUUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU | 3 |
| UUCG | 1 |
| AUUUUU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: