#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-42-3
1 HL_8C3A_1968C3A0.39652CM SSU rRNAC228U229G232G233cWWtSWa
2 HL_8C3A_0348C3A0.000041 LSU rRNAG1562A1563U1568C1569cWW
3 HL_8H9D_0018H9D0.85363GRNA (21-mer)C11U12G15G17cWW
4 HL_5ID6_0015ID60.87423GRNA (21-mer)C11U12G15G17cWW
5 HL_5XUZ_0015XUZ0.86533BcrRNAC-12U-11G-8G-6cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAGUG3
CUUCGG1
GAUUUUUC1
Non-Watson-Crick part of the motif
SequenceCounts
UAAGU3
UUCG1
AUUUUU1

Release history

Release3.87
Date2024-08-14
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.15 | Avg 0.53 | Max 0.98
    Help

    Coloring options:

    HL_8C3A_196:HL_8C3A_196 = 0HL_8C3A_196:HL_8C3A_034 = 0.3965HL_8C3A_196:HL_8H9D_001 = 0.9803HL_8C3A_196:HL_5ID6_001 = 0.9789HL_8C3A_196:HL_5XUZ_001 = 0.9368HL_8C3A_034:HL_8C3A_196 = 0.3965HL_8C3A_034:HL_8C3A_034 = 0HL_8C3A_034:HL_8H9D_001 = 0.8536HL_8C3A_034:HL_5ID6_001 = 0.8742HL_8C3A_034:HL_5XUZ_001 = 0.8653HL_8H9D_001:HL_8C3A_196 = 0.9803HL_8H9D_001:HL_8C3A_034 = 0.8536HL_8H9D_001:HL_8H9D_001 = 0HL_8H9D_001:HL_5ID6_001 = 0.2348HL_8H9D_001:HL_5XUZ_001 = 0.3006HL_5ID6_001:HL_8C3A_196 = 0.9789HL_5ID6_001:HL_8C3A_034 = 0.8742HL_5ID6_001:HL_8H9D_001 = 0.2348HL_5ID6_001:HL_5ID6_001 = 0HL_5ID6_001:HL_5XUZ_001 = 0.1474HL_5XUZ_001:HL_8C3A_196 = 0.9368HL_5XUZ_001:HL_8C3A_034 = 0.8653HL_5XUZ_001:HL_8H9D_001 = 0.3006HL_5XUZ_001:HL_5ID6_001 = 0.1474HL_5XUZ_001:HL_5XUZ_001 = 0HL_8C3A_196HL_8C3A_034HL_8H9D_001HL_5ID6_001HL_5XUZ_001Discrepancy0.000.200.400.600.80
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