Motif HL_78361.1 Version HL_78361.1 of this group appears in releases 0.3 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SLQ_001 | 3SLQ | 0.7901 | 1 | A | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS |
| 2 | HL_3RKF_001 | 3RKF | 0.0000 | 1 | A | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | |
| 3 | HL_3FO4_001 | 3FO4 | 0.1551 | 1 | A | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUAAUGGG | 1 |
| GGAUAUAGC | 1 |
| GGAUAUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUGG | 1 |
| GAUAUAG | 1 |
| GAUAUGG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_78361.1 | Only in the parent motif |
|---|---|---|---|
| HL_36211.1 Compare | HL_3FO4_001 | HL_3RKF_001, HL_3SLQ_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-cSS-R-R
- Heat map statistics
- Min 0.16 | Avg 0.39 | Max 0.83
Coloring options: