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Motif HL_79299.1 Version HL_79299.1 of this group appears in releases 3.2 to 3.2

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_4U7U_0014U7U0.51331UNCGLcrRNAC51G52C54A55G56cWWtSW
2 HL_3IGI_0083IGI0.34771UNCGAGroup IIC intronG338U339C341G342C343cWWtSW
3 HL_1KUQ_0011KUQ0.19551UNCGB16S RIBOSOMAL RNA FRAGMENTC8U9C11G12G13cWWtSW
4 HL_5J7L_0095J7L0.16721UNCGAA SSU rRNAC342U343C345G346G347cWWtSW
5 HL_4LFB_0314LFB0.15061UNCGA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
6 HL_3U4M_0013U4M0.16911UNCGB LSU rRNAC2143U2144C2146G2147G2148cWWtSW
7 HL_2HW8_0012HW80.12411UNCGB36-MERC15U16C18G19G20cWWtSW
8 HL_4AY2_0014AY20.14871UNCGC5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3'C8U9C11G12G13cWWtSW
9 HL_1UN6_0031UN60.12421UNCGF5S RIBOSOMAL RNAC15U16C18G19G64cWWtSW
10 HL_4LFB_0094LFB0.12071UNCGA SSU rRNAC342U343C345G346G347cWWtSW
11 HL_4V9F_0444V9F0.09691UNCG0 LSU rRNAC1769U1770C1772G1773G1774cWWtSW
12 HL_4PDB_0014PDB0.12001UNCGISELEX RNA aptamerC17U18C20G21G22cWWtSW
13 HL_5D5L_0035D5L0.07901UNCGAPreQ1-II riboswitchC60U61C63G64G65cWWtSW
14 HL_4JF2_0034JF20.11021UNCGAPreQ1-II RiboswitchC60U61C63G64G65cWWtSW
15 HL_5LYS_0025LYS0.09261UNCGB7SK RNAC48U48|||AC48|||CG48|||DG60cWWtSW
16 HL_5J7L_1755J7L0.06541UNCGDA LSU rRNAC1691U1692C1694G1695G1696cWWtSW
17 HL_4Y4O_1444Y4O0.00001UNCG2A LSU rRNAC1691U1692C1694G1695G1696cWWtSW
18 HL_4V8P_1254V8P0.07141UNCGD1 LSU rRNAC1947U1948C1950G1951G1952cWWtSW
19 HL_4LFB_0114LFB0.09281UNCGA SSU rRNAC419U420C422G423G424cWWtSW
20 HL_5J7L_0115J7L0.10671UNCGAA SSU rRNAC419U420C422G423G424cWWtSW
21 HL_5J7L_0305J7L0.15411UNCGAA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
22 HL_4PMI_0024PMI0.09331UNCGARev-Response-Element RNAC53||||13_455U54||||13_455C56||||13_455G57||||13_455G58||||13_455cWWtSW
23 HL_4PMI_0064PMI0.09331UNCGARev-Response-Element RNAC53||||6_445U54||||6_445C56||||6_445G57||||6_445G58||||6_445cWWtSW
24 HL_4PMI_0044PMI0.09331UNCGARev-Response-Element RNAC53U54C56G57G58cWWtSW
25 HL_4PMI_0014PMI0.09331UNCGARev-Response-Element RNAC53||||12_455U54||||12_455C56||||12_455G57||||12_455G58||||12_455cWWtSW
26 HL_4PMI_0034PMI0.09331UNCGARev-Response-Element RNAC53||||18_445U54||||18_445C56||||18_445G57||||18_445G58||||18_445cWWtSW
27 HL_4PMI_0054PMI0.09331UNCGARev-Response-Element RNAC53||||24_444U54||||24_444C56||||24_444G57||||24_444G58||||24_444cWWtSW
28 HL_4IOA_0414IOA0.09381UNCGX LSU rRNAC1708U1709C1711G1712G1713cWWtSW
29 HL_4WF9_0404WF90.09981UNCGX LSU rRNAC1735U1736C1738G1739G1740cWWtSW
30 HL_4V88_1964V880.13071UNCGA6 SSU rRNAC414C415A417G418G419cWWtSW
31 HL_1I6U_0011I6U0.13641UNCGC16S RRNA FRAGMENTC16U17C19G20G21cWWtSW
32 HL_1NBS_0061NBS0.20761UNCGB RNase P class BC152U153C155G156G157cWWtSW
33 HL_5J7L_1715J7L0.27311UNCGDA LSU rRNAC1533U1534C1536G1537G1538cWWtSW
34 HL_4V5O_0464V5O0.29581Other HLBA SSU rRNAC405U406C408G409G410cWWtSW
35 HL_3V7E_0023V7E0.50871Other HLC SAM-I riboswitchC65U66C68G69G70cWW
36 HL_5J7L_0055J7L0.42081UNCGAA SSU rRNAC207U208C210G211G212cWWntSW
37 HL_5J7L_1845J7L0.87771 DA LSU rRNAC2143G2144C2146A2147G2148cWWntSH
38 HL_1KUQ_0021KUQ0.71501 B16S RIBOSOMAL RNA FRAGMENTC32U33C35G36G37cWW
39 HL_2CZJ_0072CZJ0.86761Other HLHtmRNA (63-MER)G25U26C28G29C30cWW
40 HL_1P6V_0011P6V0.68851Other HLB45-MERC26U27C29G30G31cWW
41 HL_4V8P_0974V8P0.58341Other HLD1 LSU rRNAC626U627A629G630G631cWWncWW
42 HL_2NUE_0012NUE0.62961Other HLC46-MERC21G22A24A25G26cWWncSW
43 HL_5J7L_2005J7L0.77752Other HLDA LSU rRNAC2795U2796U2798A2799G2801cWWncWW
44 HL_4Y4O_1114Y4O0.82102Other HL2A LSU rRNAG271|||IC271|||JU271|||LG271|||MC271|||OcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUCGG28
CUACGG6
CGCCAG2
GUUCGC2
CUCCGG1
CCAAGG1
CUAAGG1
CGCAAG1
CUUUAAG1
GCUUGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCG30
UACG6
GCCA2
UCCG1
CAAG1
UAAG1
GCAA1
UUUAA1
CUUGU1

Release history

Release3.2
Date2018-09-26
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UNCG (34)
  • Other HL (8)
    • Basepair signature
    cWW-tSW-R
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 1.01
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