Motif HL_79299.1 Version HL_79299.1 of this group appears in releases 3.2 to 3.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4U7U_001	4U7U	0.5133	1	UNCG	L	crRNA	C	51	G	52	C	54	A	55	G	56	cWW	tSW
2	HL_3IGI_008	3IGI	0.3477	1	UNCG	A	Group IIC intron	G	338	U	339	C	341	G	342	C	343	cWW	tSW
3	HL_1KUQ_001	1KUQ	0.1955	1	UNCG	B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
4	HL_5J7L_009	5J7L	0.1672	1	UNCG	AA	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
5	HL_4LFB_031	4LFB	0.1506	1	UNCG	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
6	HL_3U4M_001	3U4M	0.1691	1	UNCG	B	LSU rRNA	C	2143	U	2144	C	2146	G	2147	G	2148	cWW	tSW
7	HL_2HW8_001	2HW8	0.1241	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
8	HL_4AY2_001	4AY2	0.1487	1	UNCG	C	5'-R-PPP(GPGPCPGPCPGPGPCPUPUPCPGPGPCP CPGPCPGPCP*C)-3'	C	8	U	9	C	11	G	12	G	13	cWW	tSW
9	HL_1UN6_003	1UN6	0.1242	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
10	HL_4LFB_009	4LFB	0.1207	1	UNCG	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
11	HL_4V9F_044	4V9F	0.0969	1	UNCG	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
12	HL_4PDB_001	4PDB	0.1200	1	UNCG	I	SELEX RNA aptamer	C	17	U	18	C	20	G	21	G	22	cWW	tSW
13	HL_5D5L_003	5D5L	0.0790	1	UNCG	A	PreQ1-II riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
14	HL_4JF2_003	4JF2	0.1102	1	UNCG	A	PreQ1-II Riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
15	HL_5LYS_002	5LYS	0.0926	1	UNCG	B	7SK RNA	C	48	U	48\|\|\|A	C	48\|\|\|C	G	48\|\|\|D	G	60	cWW	tSW
16	HL_5J7L_175	5J7L	0.0654	1	UNCG	DA	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
17	HL_4Y4O_144	4Y4O	0.0000	1	UNCG	2A	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
18	HL_4V8P_125	4V8P	0.0714	1	UNCG	D1	LSU rRNA	C	1947	U	1948	C	1950	G	1951	G	1952	cWW	tSW
19	HL_4LFB_011	4LFB	0.0928	1	UNCG	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
20	HL_5J7L_011	5J7L	0.1067	1	UNCG	AA	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
21	HL_5J7L_030	5J7L	0.1541	1	UNCG	AA	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
22	HL_4PMI_002	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53\|\|\|\|13_455	U	54\|\|\|\|13_455	C	56\|\|\|\|13_455	G	57\|\|\|\|13_455	G	58\|\|\|\|13_455	cWW	tSW
23	HL_4PMI_006	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53\|\|\|\|6_445	U	54\|\|\|\|6_445	C	56\|\|\|\|6_445	G	57\|\|\|\|6_445	G	58\|\|\|\|6_445	cWW	tSW
24	HL_4PMI_004	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53	U	54	C	56	G	57	G	58	cWW	tSW
25	HL_4PMI_001	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53\|\|\|\|12_455	U	54\|\|\|\|12_455	C	56\|\|\|\|12_455	G	57\|\|\|\|12_455	G	58\|\|\|\|12_455	cWW	tSW
26	HL_4PMI_003	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53\|\|\|\|18_445	U	54\|\|\|\|18_445	C	56\|\|\|\|18_445	G	57\|\|\|\|18_445	G	58\|\|\|\|18_445	cWW	tSW
27	HL_4PMI_005	4PMI	0.0933	1	UNCG	A	Rev-Response-Element RNA	C	53\|\|\|\|24_444	U	54\|\|\|\|24_444	C	56\|\|\|\|24_444	G	57\|\|\|\|24_444	G	58\|\|\|\|24_444	cWW	tSW
28	HL_4IOA_041	4IOA	0.0938	1	UNCG	X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
29	HL_4WF9_040	4WF9	0.0998	1	UNCG	X	LSU rRNA	C	1735	U	1736	C	1738	G	1739	G	1740	cWW	tSW
30	HL_4V88_196	4V88	0.1307	1	UNCG	A6	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
31	HL_1I6U_001	1I6U	0.1364	1	UNCG	C	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
32	HL_1NBS_006	1NBS	0.2076	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
33	HL_5J7L_171	5J7L	0.2731	1	UNCG	DA	LSU rRNA	C	1533	U	1534	C	1536	G	1537	G	1538	cWW	tSW
34	HL_4V5O_046	4V5O	0.2958	1	UNCG	BA	SSU rRNA	C	405	U	406	C	408	G	409	G	410	cWW	tSW
35	HL_3V7E_002	3V7E	0.5087	1	UNCG variation	C	SAM-I riboswitch	C	65	U	66	C	68	G	69	G	70	cWW
36	HL_5J7L_005	5J7L	0.4208	1	UNCG	AA	SSU rRNA	C	207	U	208	C	210	G	211	G	212	cWW	ntSW
37	HL_5J7L_184	5J7L	0.8777	1	UNCG (H)	DA	LSU rRNA	C	2143	G	2144	C	2146	A	2147	G	2148	cWW	ntSH
38	HL_1KUQ_002	1KUQ	0.7150	1		B	16S RIBOSOMAL RNA FRAGMENT	C	32	U	33	C	35	G	36	G	37	cWW
39	HL_2CZJ_007	2CZJ	0.8676	1	UNCG variation	H	tmRNA (63-MER)	G	25	U	26	C	28	G	29	C	30	cWW
40	HL_1P6V_001	1P6V	0.6885	1	UNCG variation	B	45-MER	C	26	U	27	C	29	G	30	G	31	cWW
41	HL_4V8P_097	4V8P	0.5834	1	UNCG	D1	LSU rRNA	C	626	U	627	A	629	G	630	G	631	cWW	ncWW
42	HL_2NUE_001	2NUE	0.6296	1	GNRA related	C	46-MER	C	21	G	22	A	24	A	25	G	26	cWW	ncSW
43	HL_5J7L_200	5J7L	0.7775	2	Other HL	DA	LSU rRNA	C	2795	U	2796	U	2798	A	2799	G	2801	cWW	ncWW
44	HL_4Y4O_111	4Y4O	0.8210	2	Other HL	2A	LSU rRNA	G	271\|\|\|I	C	271\|\|\|J	U	271\|\|\|L	G	271\|\|\|M	C	271\|\|\|O	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	28
CUACGG	6
CGCCAG	2
GUUCGC	2
CUCCGG	1
CCAAGG	1
CUAAGG	1
CGCAAG	1
CUUUAAG	1
GCUUGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	30
UACG	6
GCCA	2
UCCG	1
CAAG	1
UAAG	1
GCAA	1
UUUAA	1
CUUGU	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UNCG (36)
UNCG variation (3)
Other HL (2)
(1)
GNRA related (1)
UNCG (H) (1)
Basepair signature: cWW-tSW-R
Heat map statistics: Min 0.07 | Avg 0.39 | Max 1.01

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