Motif HL_79898.1 Version HL_79898.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RMO_001 | 4RMO | 0.7641 | 2 | B | RNA (45-MER) | C | 11 | U | 12 | C | 15 | C | 16 | G | 17 | A | 18 | U | 19 | A | 20 | U | 21 | G | 22 | cWW | tWH | |
| 2 | HL_3HHN_006 | 3HHN | 0.0000 | 2 | E | Class I ligase ribozyme, self-ligation product | G | 1 | G | 2 | C | 5 | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH | |
| 3 | HL_3IVK_001 | 3IVK | 0.1330 | 2 | M | class I ligase product | G | 1 | G | 2 | C | 5||A | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACACUAUAC | 2 |
| CUGACCGAUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACACUAUA | 2 |
| UGACCGAUAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-F-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.37 | Max 0.77
Coloring options: