Motif HL_80325.1 Version HL_80325.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QTQ_002 | 1QTQ | 0.1818 | 2 | tRNA anticodon loop | B | tRNA | A | 931 | U | 932 | U | 933 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH | |
| 2 | HL_4JXZ_002 | 4JXZ | 0.0000 | 2 | tRNA anticodon loop | B | tRNA | U | 931 | U | 932 | U | 933 | U | 935 | A | 937 | U | 938 | A | 939 | cWW | ntSH | |
| 3 | HL_4V8P_130 | 4V8P | 0.6814 | 1 | D1 | LSU rRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW | ||
| 4 | HL_4V9F_049 | 4V9F | 0.6971 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCUGAUU | 1 |
| UUUUUGAUA | 1 |
| ACGCAAUU | 1 |
| CGUACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCUGAU | 1 |
| UUUUGAU | 1 |
| CGCAAU | 1 |
| GUACAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (2)
- (1)
- GNRA related (1)
- Basepair signature
- cWW-cWW-tSH-R
- Heat map statistics
- Min 0.18 | Avg 0.46 | Max 0.74
Coloring options: