Motif HL_80459.1 Version HL_80459.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-4 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_030 | 2ZJR | 0.8633 | 0 | X | LSU rRNA | C | 1185 | G | 1186 | A | 1187 | A | 1188 | G | 1189 | ntWH | cWW | |
| 2 | HL_3V2F_039 | 3V2F | 0.6617 | 1 | A | LSU rRNA | C | 1631 | A | 1631|||A | A | 1632 | G | 1633 | G | 1635 | cWW | ||
| 3 | HL_2ZJR_041 | 2ZJR | 0.6627 | 1 | X | LSU rRNA | U | 1647 | C | 1648 | A | 1649 | A | 1650 | G | 1652 | cWW | ||
| 4 | HL_2QBG_035 | 2QBG | 0.3579 | 2 | B | LSU rRNA | G | 1324 | U | 1326 | A | 1327 | A | 1328 | C | 1330 | cWW | ||
| 5 | HL_1S72_035 | 1S72 | 0.2747 | 2 | Pseudoknot geometry with 3' bulge (H) | 0 | LSU rRNA | G | 1430 | U | 1432 | G | 1433 | A | 1434 | C | 1436 | cWW | |
| 6 | HL_2ZJR_033 | 2ZJR | 0.2331 | 2 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1337 | U | 1339 | C | 1340 | G | 1341 | C | 1343 | cWW | |
| 7 | HL_3V2F_031 | 3V2F | 0.1868 | 2 | A | LSU rRNA | G | 1324 | U | 1326 | C | 1327 | G | 1328 | C | 1330 | cWW | ||
| 8 | HL_2QBG_039 | 2QBG | 0.0000 | 2 | B | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | ||
| 9 | HL_3V2F_035 | 3V2F | 0.1150 | 2 | A | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | ||
| 10 | HL_3U5H_032 | 3U5H | 0.2108 | 2 | 5 | LSU rRNA | A | 1506 | C | 1508 | A | 1509 | G | 1510 | U | 1512 | cWW | ||
| 11 | HL_4A1B_031 | 4A1B | 0.2313 | 2 | 1 | LSU rRNA | A | 1532 | C | 1534 | A | 1535 | A | 1536 | U | 1538 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCGUC | 2 |
| GCAAAUC | 2 |
| CGAAG | 1 |
| CAAGAG | 1 |
| UCAAUG | 1 |
| GUUAAUC | 1 |
| GCUGAUC | 1 |
| AGCAGUU | 1 |
| AGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGU | 2 |
| CAAAU | 2 |
| GAA | 1 |
| AAGA | 1 |
| CAAU | 1 |
| UUAAU | 1 |
| CUGAU | 1 |
| GCAGU | 1 |
| GCAAU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_80459.1 | Only in the parent motif |
|---|---|---|---|
| HL_83914.2 Compare | HL_1S72_035, HL_2QBG_035, HL_2ZJR_030, HL_2ZJR_033, HL_2ZJR_041, HL_2QBG_039 | HL_3U5H_032, HL_3V2F_035, HL_3V2F_031, HL_4A1B_031, HL_3V2F_039 | HL_3PYO_041, HL_3PYO_033, HL_2ZJR_037, HL_3O58_032 |
Children motifs
| Child motif | Common motif instances | Only in HL_80459.1 | Only in the child motif |
|---|---|---|---|
| HL_80459.2 Compare | HL_3U5H_032, HL_1S72_035, HL_2QBG_035, HL_3V2F_039, HL_3V2F_035, HL_4A1B_031, HL_3V2F_031, HL_2QBG_039 | HL_2ZJR_041, HL_2ZJR_030, HL_2ZJR_033 | HL_4IOA_040, HL_4IOA_032 |
- Annotations
-
- (9)
- Pseudoknot geometry with 3' bulge (H) (2)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 0.93
Coloring options: