Motif HL_80459.1 Version HL_80459.1 of this group appears in releases 0.3 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-4	1-5
1	HL_2ZJR_030	2ZJR	0.8633	0		X	LSU rRNA	C	1185	G	1186	A	1187	A	1188	G	1189	ntWH	cWW
2	HL_3V2F_039	3V2F	0.6617	1		A	23S Ribosomal RNA	C	1631	A	1631\|\|\|A	A	1632	G	1633	G	1635		cWW
3	HL_2ZJR_041	2ZJR	0.6627	1		X	LSU rRNA	U	1647	C	1648	A	1649	A	1650	G	1652		cWW
4	HL_2QBG_035	2QBG	0.3579	2		B	23S rRNA	G	1324	U	1326	A	1327	A	1328	C	1330		cWW
5	HL_1S72_035	1S72	0.2747	2	Pseudoknot geometry with 3' bulge (H)	0	LSU rRNA	G	1430	U	1432	G	1433	A	1434	C	1436		cWW
6	HL_2ZJR_033	2ZJR	0.2331	2	Pseudoknot geometry with 3' bulge (H)	X	LSU rRNA	G	1337	U	1339	C	1340	G	1341	C	1343		cWW
7	HL_3V2F_031	3V2F	0.1868	2		A	23S Ribosomal RNA	G	1324	U	1326	C	1327	G	1328	C	1330		cWW
8	HL_2QBG_039	2QBG	0.0000	2		B	23S rRNA	G	1492	A	1494	A	1495	A	1496	C	1498		cWW
9	HL_3V2F_035	3V2F	0.1150	2		A	23S Ribosomal RNA	G	1492	A	1494	A	1495	A	1496	C	1498		cWW
10	HL_3U5H_032	3U5H	0.2108	2		5	25S rRNA	A	1506	C	1508	A	1509	G	1510	U	1512		cWW
11	HL_4A1B_031	4A1B	0.2313	2		1	26S RRNA	A	1532	C	1534	A	1535	A	1536	U	1538		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUCGUC	2
GCAAAUC	2
CGAAG	1
CAAGAG	1
UCAAUG	1
GUUAAUC	1
GCUGAUC	1
AGCAGUU	1
AGCAAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUCGU	2
CAAAU	2
GAA	1
AAGA	1
CAAU	1
UUAAU	1
CUGAU	1
GCAGU	1
GCAAU	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_80459.1	Only in the parent motif
HL_83914.2 Compare	HL_1S72_035, HL_2QBG_035, HL_2ZJR_030, HL_2ZJR_033, HL_2ZJR_041, HL_2QBG_039	HL_3U5H_032, HL_3V2F_035, HL_3V2F_031, HL_4A1B_031, HL_3V2F_039	HL_3PYO_041, HL_3PYO_033, HL_2ZJR_037, HL_3O58_032

Children motifs

Child motif	Common motif instances	Only in HL_80459.1	Only in the child motif
HL_80459.2 Compare	HL_3U5H_032, HL_1S72_035, HL_2QBG_035, HL_3V2F_039, HL_3V2F_035, HL_4A1B_031, HL_3V2F_031, HL_2QBG_039	HL_2ZJR_041, HL_2ZJR_030, HL_2ZJR_033	HL_4IOA_040, HL_4IOA_032

Annotations: (9)
Pseudoknot geometry with 3' bulge (H) (2)
Basepair signature: cWW-R-R
Heat map statistics: Min 0.11 | Avg 0.45 | Max 0.93

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