Motif HL_80492.3 Version HL_80492.3 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4AQ7_001 | 4AQ7 | 0.0000 | 5 | tRNA D-loop (H) | B | tRNA | G | 12 | G | 13 | A | 14 | A | 15 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | cWS | tSH | cWS |
| 2 | HL_2BTE_005 | 2BTE | 0.1459 | 5 | tRNA D-loop (H) | E | tRNA | G | 12 | G | 13 | A | 14 | A | 15 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | cWS | tSH | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUCGGUAGAC | 1 |
| GGAAUGGGUAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUCGGUAGA | 1 |
| GAAUGGGUAGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (H) (2)
- Basepair signature
- cWW-tSH-cWS-cWS-R
- Heat map statistics
- Min 0.15 | Avg 0.07 | Max 0.15
Coloring options: