#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-42-3
1 HL_4KR9_0044KR90.80852XRNA (39-MER)G19G20A23C24cWW
2 HL_8C3A_1968C3A0.00002CM SSU rRNAC228U229G232G233cWWtSWa
3 HL_8C3A_0348C3A0.396541 LSU rRNAG1562A1563U1568C1569cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAAAC1
CUUCGG1
GAUUUUUC1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA1
UUCG1
AUUUUU1

Release history

Release3.803.813.823.833.843.853.86
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.40 | Avg 0.49 | Max 0.99
    Help

    Coloring options:

    HL_4KR9_004:HL_4KR9_004 = 0HL_4KR9_004:HL_8C3A_196 = 0.8085HL_4KR9_004:HL_8C3A_034 = 0.9853HL_8C3A_196:HL_4KR9_004 = 0.8085HL_8C3A_196:HL_8C3A_196 = 0HL_8C3A_196:HL_8C3A_034 = 0.3965HL_8C3A_034:HL_4KR9_004 = 0.9853HL_8C3A_034:HL_8C3A_196 = 0.3965HL_8C3A_034:HL_8C3A_034 = 0HL_4KR9_004HL_8C3A_196HL_8C3A_034Discrepancy0.000.200.400.600.80
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