Motif HL_81868.1 Version HL_81868.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5A2Q_037 | 5A2Q | 0.1946 | 1 | 3 | IRES | U | 294 | G | 295 | A | 296 | A | 298 | G | 299 | cWW | tSW |
| 2 | HL_3T4B_002 | 3T4B | 0.0000 | 1 | A | HCV IRES pseudoknot domain plus crystallization module | U | 294 | G | 295 | A | 296 | A | 298 | G | 299 | cWW | tSW |
| 3 | HL_3J9M_055 | 3J9M | 0.5531 | 1 | AA | SSU rRNA | C | 1310 | C | 1311 | C | 1312 | C | 1314 | G | 1315 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUAG | 2 |
| CCCACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUA | 2 |
| CCAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.19 | Avg 0.30 | Max 0.58
Coloring options: