Motif HL_82294.5 Version HL_82294.5 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_026 | 1VX2 | 0.2677 | 1 | 2 | 18S ribosomal RNA | G | 1366 | U | 1367 | U | 1368 | A | 1369 | A | 1370 | U | 1372 | C | 1373 | ncWW | ncwW | |
| 2 | HL_3R4F_001 | 3R4F | 0.2517 | 1 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW |
| 3 | HL_2AW7_025 | 2AW7 | 0.1785 | 1 | A | 16S ribosomal RNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 4 | HL_1FJG_025 | 1FJG | 0.1881 | 1 | T-loop related (H) | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 5 | HL_3J7A_026 | 3J7A | 0.1082 | 1 | A | SSU rRNA | G | 1411 | U | 1412 | U | 1413 | A | 1414 | A | 1415 | U | 1417 | C | 1418 | cWW | cwW | |
| 6 | HL_4BPP_029 | 4BPP | 0.0000 | 1 | A | 18S RRNA | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1287 | C | 1288 | cWW | cwW | |
| 7 | HL_4CUX_030 | 4CUX | 0.2739 | 1 | 2 | 18S RRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 8 | HL_3U5F_030 | 3U5F | 0.2280 | 1 | 6 | 18S rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 9 | HL_4CUV_024 | 4CUV | 0.3235 | 1 | 1 | 25S RRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | ncwW | |
| 10 | HL_3U5H_024 | 3U5H | 0.3127 | 1 | 5 | 25S rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 11 | HL_4A1B_025 | 4A1B | 0.4091 | 1 | 1 | 26S RRNA | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | U | 1110 | G | 1111 | cWW | cwW | |
| 12 | HL_3U5H_038 | 3U5H | 0.6682 | 0 | 5 | 25S rRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW | |
| 13 | HL_4CUV_038 | 4CUV | 0.6616 | 0 | 1 | 25S RRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAAUUG | 4 |
| GUUAAUUC | 3 |
| GUUAAGUC | 2 |
| GUUUAUC | 2 |
| AUUGAGUU | 1 |
| CUUAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 7 |
| UUAAGU | 2 |
| UUUAU | 2 |
| UUGAGU | 1 |
| UUAAAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_82294.5 | Only in the parent motif |
|---|---|---|---|
| HL_82294.4 Compare | HL_4CUV_038, HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_3U5H_038, HL_4BPP_029, HL_4CUV_024, HL_4CUX_030, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_3J7A_026, HL_1VX2_026 |
Children motifs
| Child motif | Common motif instances | Only in HL_82294.5 | Only in the child motif |
|---|---|---|---|
| HL_82294.6 Compare | HL_4CUV_038, HL_3U5H_024, HL_3R4F_001, HL_4A1B_025, HL_3U5H_038, HL_4BPP_029, HL_4CUV_024, HL_3J7A_026, HL_4CUX_030, HL_1FJG_025, HL_2AW7_025, HL_3U5F_030 | HL_1VX2_026 | HL_4W23_027 |
- Annotations
-
- (11)
- T-loop related (H) (1)
- T-loop related (1)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.11 | Avg 0.37 | Max 0.76
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