Motif HL_82418.1 Version HL_82418.1 of this group appears in releases 1.14 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_003 | 1VW3 | 0.2810 | 1 | A | 21S ribosomal RNA | G | 153 | U | 154 | A | 156 | A | 157 | C | 158 | cWW |
| 2 | HL_4IOA_003 | 4IOA | 0.1513 | 1 | X | LSU rRNA | G | 121 | G | 122 | A | 124 | A | 125 | C | 126 | cWW |
| 3 | HL_4NVV_003 | 4NVV | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 121 | G | 122 | A | 124 | A | 125 | C | 126 | cWW |
| 4 | HL_2QBG_005 | 2QBG | 0.6271 | 1 | B | 23S rRNA | G | 123 | G | 124 | A | 126 | A | 127 | C | 128 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 2 |
| GUAAAC | 1 |
| GGGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| UAAA | 1 |
| GGAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_82418.1 | Only in the parent motif |
|---|---|---|---|
| HL_76036.3 Compare | HL_2QBG_005, HL_4IOA_003 | HL_1VW3_003, HL_4NVV_003 | HL_3V2F_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_82418.1 | Only in the child motif |
|---|---|---|---|
| HL_82418.2 Compare | HL_1VW3_003, HL_2QBG_005, HL_4IOA_003 | HL_4NVV_003 | HL_4QCN_003 |
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