Motif HL_82538.4 Version HL_82538.4 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4C9D_002 | 4C9D | 0.7706 | 0 | D | R3 REPEAT RNA CLEAVAGE PRODUCT | C | 21 | G | 22 | U | 23 | A | 24 | G | 25 | ncWW |
| 2 | HL_4NVV_006 | 4NVV | 0.6297 | 1 | A | LSU rRNA | A | 214 | G | 215 | A | 216 | A | 217 | U | 219 | cWW |
| 3 | HL_4IOA_007 | 4IOA | 0.6067 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW |
| 4 | HL_4A1C_003 | 4A1C | 0.3786 | 2 | 2 | 5.8S rRNA | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW |
| 5 | HL_4CUV_077 | 4CUV | 0.2296 | 2 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW |
| 6 | HL_3U5H_076 | 3U5H | 0.1535 | 2 | 8 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW |
| 7 | HL_1VX6_073 | 1VX6 | 0.0000 | 2 | C | 5.8S rRNA | U | 111 | A | 112 | A | 113 | C | 115 | A | 117 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 2 |
| CGUAG | 1 |
| AGAAAU | 1 |
| AGAAUU | 1 |
| CAAGUGG | 1 |
| UAAACUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 2 |
| GUA | 1 |
| GAAA | 1 |
| GAAU | 1 |
| AAGUG | 1 |
| AAACU | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_82538.4 | Only in the parent motif |
|---|---|---|---|
| HL_82538.3 Compare | HL_4CUV_077, HL_4C9D_002, HL_4NVV_006, HL_4A1C_003, HL_3U5H_076, HL_4IOA_007 | HL_1VX6_073 |
Children motifs
| Child motif | Common motif instances | Only in HL_82538.4 | Only in the child motif |
|---|---|---|---|
| HL_82538.5 Compare | HL_4CUV_077, HL_4C9D_002, HL_4A1C_003, HL_1VX6_073, HL_3U5H_076, HL_4IOA_007 | HL_4NVV_006 | HL_4QCN_006 |
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