Motif HL_86077.3 Version HL_86077.3 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QCN_041 | 4QCN | 0.3177 | 1 | A | 23S Ribosomal RNA | U | 1765 | G | 1766 | A | 1767 | G | 1769 | A | 1770 | G | 1771 | cWW | tSH | |
| 2 | HL_2AW7_027 | 2AW7 | 0.2956 | 1 | A | 16S ribosomal RNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH | |
| 3 | HL_2QBG_017 | 2QBG | 0.2873 | 1 | B | 23S rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | ntSH | |
| 4 | HL_1FJG_012 | 1FJG | 0.0000 | 1 | GNRA (H) | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 5 | HL_1VWW_013 | 1VWW | 0.2610 | 1 | 5 | 28S ribosomal RNA | C | 1252 | G | 1253 | A | 1254 | G | 1256 | A | 1257 | G | 1258 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUGAG | 1 |
| UGAUAAA | 1 |
| CGGCGAG | 1 |
| CGACGAG | 1 |
| CGAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGA | 1 |
| GAUAA | 1 |
| GGCGA | 1 |
| GACGA | 1 |
| GAAGA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86077.3 | Only in the parent motif |
|---|---|---|---|
| HL_86077.2 Compare | HL_1FJG_012, HL_1VWW_013, HL_2QBG_017, HL_2AW7_027 | HL_4QCN_041 | HL_4NVV_041 |
Children motifs
| Child motif | Common motif instances | Only in HL_86077.3 | Only in the child motif |
|---|---|---|---|
| HL_86077.4 Compare | HL_1FJG_012, HL_2QBG_017, HL_2AW7_027, HL_4QCN_041 | HL_1VWW_013 | HL_4W21_013 |
- Annotations
-
- (4)
- GNRA (H) (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.26 | Avg 0.26 | Max 0.44
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