Motif HL_86115.3 Version HL_86115.3 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4M4O_001 | 4M4O | 0.4934 | 1 | D-loop related | B | RNA (59-MER) | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
| 2 | HL_4M6D_004 | 4M6D | 0.4901 | 1 | D-loop related | H | aptamer | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
| 3 | HL_1GID_003 | 1GID | 0.0000 | 3 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 234 | A | 235 | U | 239 | C | 240 | cWW | ncWW | |
| 4 | HL_1GID_006 | 1GID | 0.0096 | 3 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 234 | A | 235 | U | 239 | C | 240 | cWW | ncWW | |
| 5 | HL_4W21_029 | 4W21 | 0.6530 | 0 | 5 | 28S ribosomal RNA | G | 2130 | C | 2131 | C | 2243 | C | 2244 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAG | 2 |
| GAUCUUC | 2 |
| GCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA | 2 |
| AUCUU | 2 |
| CC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86115.3 | Only in the parent motif |
|---|---|---|---|
| HL_86115.2 Compare | HL_1GID_006, HL_4M6D_004, HL_1GID_003, HL_4M4O_001 | HL_4W21_029 | HL_1VWW_029 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- D-loop related (2)
- Basepair signature
- cWW-cWS
- Heat map statistics
- Min 0.01 | Avg 0.39 | Max 0.79
Coloring options: