Motif HL_86373.3 Version HL_86373.3 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_038 | 8C3A | 0.5609 | 3 | 1 | LSU rRNA | G | 1715 | U | 1716 | U | 1720 | C | 1721 | cWW | cwW |
| 2 | HL_5TBW_038 | 5TBW | 0.5575 | 3 | 1 | LSU rRNA | G | 1719 | U | 1720 | U | 1724 | C | 1725 | cWW | cwW |
| 3 | HL_5TBW_012 | 5TBW | 0.5577 | 2 | 1 | LSU rRNA | C | 543 | C | 544 | G | 547 | G | 548 | ncWW | |
| 4 | HL_8UO6_003 | 8UO6 | 0.0000 | 3 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 82 | U | 83 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUAUC | 2 |
| CCUCGG | 1 |
| AAUUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAU | 2 |
| CUCG | 1 |
| AUUAU | 1 |
Coloring options: