Motif HL_90229.1 Version HL_90229.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3WQY_002 | 3WQY | 0.8979 | 1 | C | tRNA | U | 1632 | U | 1633 | U | 1634 | C | 1636 | G | 1637 | A | 1638 | cWW | ncWW | |
| 2 | HL_6ZDP_001 | 6ZDP | 0.0000 | 6 | B | Chains: B | C | 1302 | C | 1303 | U | 1304 | U | 1311 | G | 1312 | G | 1313 | cWW | ncWW | ncwW |
| 3 | HL_7E8O_002 | 7E8O | 0.5551 | 0 | X | tRNA | G | 29 | A | 30 | U | 31 | U | 37 | U | 38 | C | 39 | cWW | ncWW | |
| 4 | HL_7VYX_001 | 7VYX | 0.6011 | 2 | C | sgRNA | A | 26 | A | 27 | G | 28 | U | 34 | C | 35 | U | 36 | ncWW | ncWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGCGA | 1 |
| CCUAAUUAGUGG | 1 |
| GAUUUC | 1 |
| AAGUUUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCG | 1 |
| CUAAUUAGUG | 1 |
| AUUU | 1 |
| AGUUUC | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-F-F
- Heat map statistics
- Min 0.36 | Avg 0.54 | Max 0.97
Coloring options: