Motif HL_90617.3 Version HL_90617.3 of this group appears in releases 3.86 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8K0K_001 | 8K0K | 0.6151 | 3 | J | RNA (60-MER) | C | 42 | G | 43 | A | 47 | G | 48 | cWW | tSH | |
| 2 | HL_361D_002 | 361D | 0.3004 | 2 | B | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH | |
| 3 | HL_361D_001 | 361D | 0.3209 | 2 | A | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH | |
| 4 | HL_4V9F_019 | 4V9F | 0.3189 | 3 | 0 | LSU rRNA | G | 670 | A | 671 | U | 675 | C | 676 | cWW | tSH | |
| 5 | HL_5J7L_151 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | C | 611 | G | 612 | A | 616 | G | 617 | cWW | tSH | |
| 6 | HL_5Y58_001 | 5Y58 | 0.3128 | 5 | X | TLC1 | U | 297 | G | 298 | A | 303 | A | 305 | cWW | tSH | |
| 7 | HL_8HNT_002 | 8HNT | 0.3775 | 2 | B | sgRNA | U | 103 | G | 104 | A | 107 | G | 108 | cWW | ||
| 8 | HL_5J7L_026 | 5J7L | 0.8718 | 3 | AA | SSU rRNA | U | 1165 | G | 1166 | A | 1170 | A | 1171 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGCGAC | 2 |
| CGCAUAG | 1 |
| GAGUAUC | 1 |
| CGAAUAG | 1 |
| UGGCUAAAA | 1 |
| UGUAAG | 1 |
| UGAUAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGA | 2 |
| GCAUA | 1 |
| AGUAU | 1 |
| GAAUA | 1 |
| GGCUAAA | 1 |
| GUAA | 1 |
| GAUAA | 1 |
Release history
| Release | 3.86 |
|---|---|
| Date | 2024-07-17 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: