Motif HL_95694.1 Version HL_95694.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4M4O_001 | 4M4O | 0.1104 | 0 | D-loop related | B | RNA (59-MER) | C | 32 | U | 33 | U | 34 | A | 35 | G | 36 | cWW | cWS |
| 2 | HL_4M6D_004 | 4M6D | 0.0000 | 0 | D-loop related | H | aptamer | C | 32 | U | 33 | U | 34 | A | 35 | G | 36 | cWW | cWS |
| 3 | HL_3JAM_007 | 3JAM | 0.9518 | 2 | 2 | SSU rRNA | C | 274 | C | 275 | U | 276 | G | 278 | G | 280 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAG | 2 |
| CCUUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA | 2 |
| CUUGU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- D-loop related (2)
- (1)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 0.98
Coloring options: