Motif HL_97879.1 Version HL_97879.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_143 | 5J7L | 0.3738 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW |
| 2 | HL_4V9F_011 | 4V9F | 0.2881 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW |
| 3 | HL_4IOA_010 | 4IOA | 0.2491 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW |
| 4 | HL_3J9W_046 | 3J9W | 0.1918 | 2 | BA | LSU rRNA | C | 363 | A | 364 | G | 367 | cWW |
| 5 | HL_5FDU_010 | 5FDU | 0.1574 | 2 | 1A | LSU rRNA | C | 343 | A | 344 | G | 347 | cWW |
| 6 | HL_3J79_006 | 3J79 | 0.1499 | 2 | A | LSU rRNA | C | 216 | A | 217 | G | 220 | cWW |
| 7 | HL_4V88_119 | 4V88 | 0.0964 | 2 | A5 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 8 | HL_4V8P_166 | 4V8P | 0.0000 | 2 | F1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 9 | HL_4V91_006 | 4V91 | 0.0956 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 10 | HL_2Y9H_003 | 2Y9H | 0.2533 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW |
| 11 | HL_3J7P_006 | 3J7P | 0.3148 | 2 | 5 | LSU rRNA | C | 222 | G | 223 | G | 226 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUAG | 4 |
| GAUAC | 2 |
| CUCAG | 1 |
| CAGAG | 1 |
| CAAAG | 1 |
| CGCGUG | 1 |
| CGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 6 |
| UCA | 1 |
| AGA | 1 |
| AAA | 1 |
| GCGU | 1 |
| GUG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: