Motif IL_01472.1 Version IL_01472.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-7	2-6	3-6	4-5
1	IL_4PHY_003	4PHY	0.6330	1	A+B	RNA (26-MER) + RNA (20-mer)	G	17	A	18	U	19	C	20	*	G	31	A	33	C	34	cWW	cWw		ncWW
2	IL_7MLW_007	7MLW	0.7155	1	F	Guanidine-I riboswitch	G	89	A	90	A	91	A	92	*	U	73	G	75	C	76	cWW	cWW		cWW
3	IL_6VMY_001	6VMY	0.5812	0	A	Cobalamin riboswitch	U	219	C	220	C	221	G	222	*	C	230	A	231	G	232	cWW	ntWH		cWW
4	IL_4P3T_002	4P3T	0.0000	0	B+A	RNA (23-mer)	G	39	A	40	A	41	G	42	*	C	7	C	8	C	9	cWW		ncWW	cWW
5	IL_4V9F_053	4V9F	0.1688	0	0	LSU rRNA	G	1475	A	1476	C	1477	U	1478	*	A	1465	C	1466	C	1467	cWW		cBW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUC*GAAC	1
GAAA*UCGC	1
UCCG*CAG	1
GAAG*CCC	1
GACU*ACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AU*AA	1
AA*CG	1
CC*A	1
AA*C	1
AC*C	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-L-R-L-cWW
Heat map statistics: Min 0.17 | Avg 0.46 | Max 0.75

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