Motif IL_01472.1 Version IL_01472.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PHY_003 | 4PHY | 0.6330 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |
| 2 | IL_7MLW_007 | 7MLW | 0.7155 | 1 | F | Guanidine-I riboswitch | G | 89 | A | 90 | A | 91 | A | 92 | * | U | 73 | G | 75 | C | 76 | cWW | cWW | cWW | |
| 3 | IL_6VMY_001 | 6VMY | 0.5812 | 0 | A | Cobalamin riboswitch | U | 219 | C | 220 | C | 221 | G | 222 | * | C | 230 | A | 231 | G | 232 | cWW | ntWH | cWW | |
| 4 | IL_4P3T_002 | 4P3T | 0.0000 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | |
| 5 | IL_4V9F_053 | 4V9F | 0.1688 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUC*GAAC | 1 |
| GAAA*UCGC | 1 |
| UCCG*CAG | 1 |
| GAAG*CCC | 1 |
| GACU*ACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*AA | 1 |
| AA*CG | 1 |
| CC*A | 1 |
| AA*C | 1 |
| AC*C | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.46 | Max 0.75
Coloring options: