Motif IL_01789.1 Version IL_01789.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_389 | 4V88 | 0.8959 | 3 | A6 | SSU rRNA | U | 58 | C | 59 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW | ||
| 2 | IL_6GSL_341 | 6GSL | 0.0000 | 0 | 1K | tRNA | C | 2 | A | 3 | U | 4 | * | A | 70 | U | 71 | G | 72 | cWW | ntHS | cWW | ||
| 3 | IL_5TBW_077 | 5TBW | 0.7233 | 4 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAG*CUG | 1 |
| CAU*AUG | 1 |
| AGUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*U | 1 |
| A*U | 1 |
| GUCG*UG | 1 |
- Annotations
-
- (2)
- Intercalated tWH (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.72 | Avg 0.57 | Max 0.94
Coloring options: