Motif IL_02060.1 Version IL_02060.1 of this group appears in releases 3.27 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_355 | 5J7L | 0.7635 | 0 | Major groove intercalation | DB | 5S rRNA | C | 17 | G | 18 | * | U | 65 | A | 66 | G | 67 | cWW | cWW | |
| 2 | IL_4Y4O_245 | 4Y4O | 0.7151 | 1 | Major groove intercalation (H) | 2A | LSU rRNA | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW | |
| 3 | IL_4WF9_106 | 4WF9 | 0.5553 | 0 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | A | 2899 | C | 2900 | cWW | cWW | |
| 4 | IL_4WF9_094 | 4WF9 | 0.1069 | 0 | Major groove platform | X | LSU rRNA | C | 2534 | G | 2535 | * | U | 2607 | G | 2608 | G | 2609 | cWW | cWW | chH |
| 5 | IL_4Y4O_271 | 4Y4O | 0.0971 | 0 | Major groove platform (H) | 2A | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 6 | IL_4V9F_086 | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 7 | IL_4V9F_083 | 4V9F | 0.3752 | 0 | Major groove platform | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| CG*UAG | 1 |
| UG*UGAA | 1 |
| GG*UAC | 1 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 3 |
| *A | 2 |
| *GA | 1 |
| *C | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (3)
- Major groove intercalation (2)
- Major groove intercalation (H) (1)
- Major groove platform (H) (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.48 | Max 0.89
Coloring options: