Motif IL_02060.2 Version IL_02060.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_083 | 4V9F | 0.3631 | 0 | Major groove platform | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 2 | IL_4V9F_086 | 4V9F | 0.0971 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 3 | IL_4WF9_094 | 4WF9 | 0.0968 | 0 | Major groove platform | X | LSU rRNA | C | 2534 | G | 2535 | * | U | 2607 | G | 2608 | G | 2609 | cWW | cWW | chH |
| 4 | IL_4Y4O_271 | 4Y4O | 0.0000 | 0 | Major groove platform (H) | 2A | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 5 | IL_7A0S_088 | 7A0S | 0.1220 | 0 | Major groove platform | X | LSU rRNA | C | 2486 | G | 2487 | * | U | 2559 | G | 2560 | G | 2561 | cWW | cWW | chH |
| 6 | IL_4WF9_106 | 4WF9 | 0.5771 | 0 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | A | 2899 | C | 2900 | cWW | cWW | |
| 7 | IL_4Y4O_245 | 4Y4O | 0.7221 | 1 | Major groove intercalation (H) | 2A | LSU rRNA | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 4 |
| UG*UCG | 1 |
| GG*UAC | 1 |
| UG*UGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *C | 1 |
| *A | 1 |
| *GA | 1 |
- Annotations
-
- Major groove platform (4)
- Major groove intercalation (1)
- Major groove intercalation (H) (1)
- Major groove platform (H) (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.38 | Max 0.77
Coloring options: