#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2break 3 4 51-52-34-5
1 IL_4V9F_0834V9F0.36310Major groove platform0 LSU rRNAU2528G2529*U2492C2493G2494cWWcWWcHH
2 IL_4V9F_0864V9F0.09710Major groove platform0 LSU rRNAC2542G2543*U2615G2616G2617cWWcWWnchH
3 IL_4WF9_0944WF90.09680Major groove platformX LSU rRNAC2534G2535*U2607G2608G2609cWWcWWchH
4 IL_4Y4O_2714Y4O0.00000Major groove platform (H)2A LSU rRNAC2507G2508*U2580G2581G2582cWWcWWchH
5 IL_7A0S_0887A0S0.12200Major groove platformX LSU rRNAC2486G2487*U2559G2560G2561cWWcWWchH
6 IL_4WF9_1064WF90.57710Major groove intercalationX LSU rRNAG2858G2859*U2898A2899C2900cWWcWW
7 IL_4Y4O_2454Y4O0.72211Major groove intercalation (H)2A LSU rRNAU1841G1842*U1898G1899A1901cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CG*UGG4
UG*UCG1
GG*UAC1
UG*UGAA1
Non-Watson-Crick part of the motif
SequenceCounts
*G4
*C1
*A1
*GA1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (4)
  • Major groove intercalation (1)
  • Major groove intercalation (H) (1)
  • Major groove platform (H) (1)
  • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.10 | Avg 0.38 | Max 0.77
    Help

    Coloring options:

    IL_4V9F_083:IL_4V9F_083 = 0IL_4V9F_083:IL_4V9F_086 = 0.3752IL_4V9F_083:IL_4WF9_094 = 0.427IL_4V9F_083:IL_4Y4O_271 = 0.3631IL_4V9F_083:IL_7A0S_088 = 0.4095IL_4V9F_083:IL_4WF9_106 = 0.7112IL_4V9F_083:IL_4Y4O_245 = 0.767IL_4V9F_086:IL_4V9F_083 = 0.3752IL_4V9F_086:IL_4V9F_086 = 0IL_4V9F_086:IL_4WF9_094 = 0.1069IL_4V9F_086:IL_4Y4O_271 = 0.0971IL_4V9F_086:IL_7A0S_088 = 0.1801IL_4V9F_086:IL_4WF9_106 = 0.5553IL_4V9F_086:IL_4Y4O_245 = 0.7151IL_4WF9_094:IL_4V9F_083 = 0.427IL_4WF9_094:IL_4V9F_086 = 0.1069IL_4WF9_094:IL_4WF9_094 = 0IL_4WF9_094:IL_4Y4O_271 = 0.0968IL_4WF9_094:IL_7A0S_088 = 0.1617IL_4WF9_094:IL_4WF9_106 = 0.5449IL_4WF9_094:IL_4Y4O_245 = 0.7016IL_4Y4O_271:IL_4V9F_083 = 0.3631IL_4Y4O_271:IL_4V9F_086 = 0.0971IL_4Y4O_271:IL_4WF9_094 = 0.0968IL_4Y4O_271:IL_4Y4O_271 = 0IL_4Y4O_271:IL_7A0S_088 = 0.122IL_4Y4O_271:IL_4WF9_106 = 0.5771IL_4Y4O_271:IL_4Y4O_245 = 0.7221IL_7A0S_088:IL_4V9F_083 = 0.4095IL_7A0S_088:IL_4V9F_086 = 0.1801IL_7A0S_088:IL_4WF9_094 = 0.1617IL_7A0S_088:IL_4Y4O_271 = 0.122IL_7A0S_088:IL_7A0S_088 = 0IL_7A0S_088:IL_4WF9_106 = 0.566IL_7A0S_088:IL_4Y4O_245 = 0.6991IL_4WF9_106:IL_4V9F_083 = 0.7112IL_4WF9_106:IL_4V9F_086 = 0.5553IL_4WF9_106:IL_4WF9_094 = 0.5449IL_4WF9_106:IL_4Y4O_271 = 0.5771IL_4WF9_106:IL_7A0S_088 = 0.566IL_4WF9_106:IL_4WF9_106 = 0IL_4WF9_106:IL_4Y4O_245 = 0.3763IL_4Y4O_245:IL_4V9F_083 = 0.767IL_4Y4O_245:IL_4V9F_086 = 0.7151IL_4Y4O_245:IL_4WF9_094 = 0.7016IL_4Y4O_245:IL_4Y4O_271 = 0.7221IL_4Y4O_245:IL_7A0S_088 = 0.6991IL_4Y4O_245:IL_4WF9_106 = 0.3763IL_4Y4O_245:IL_4Y4O_245 = 0IL_4V9F_083IL_4V9F_086IL_4WF9_094IL_4Y4O_271IL_7A0S_088IL_4WF9_106IL_4Y4O_245Discrepancy0.000.200.400.60
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