RNA 3D Hub //

Motif IL_02060.3 Version IL_02060.3 of this group appears in releases 3.54 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-34-5
1 IL_4V9F_0834V9F0.39040Major groove platform0 LSU rRNAU2528G2529*U2492C2493G2494cWWcWWcHH
2 IL_4V9F_0864V9F0.06390Major groove platform0 LSU rRNAC2542G2543*U2615G2616G2617cWWcWWnchH
3 IL_7RQB_0967RQB0.00000Major groove platform1A LSU rRNAC2507G2508*U2580G2581G2582cWWcWWchH
4 IL_4WF9_0944WF90.06980Major groove platformX LSU rRNAC2534G2535*U2607G2608G2609cWWcWWchH
5 IL_7A0S_0887A0S0.15560Major groove platformX LSU rRNAC2486G2487*U2559G2560G2561cWWcWWchH
6 IL_4WF9_1064WF90.54530Major groove intercalationX LSU rRNAG2858G2859*U2898A2899C2900cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CG*UGG4
UG*UCG1
GG*UAC1
Non-Watson-Crick part of the motif
SequenceCounts
*G4
*C1
*A1

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (5)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.29 | Max 0.71
    Help

    Coloring options:

    IL_4V9F_083:IL_4V9F_083 = 0IL_4V9F_083:IL_4V9F_086 = 0.3752IL_4V9F_083:IL_7RQB_096 = 0.3904IL_4V9F_083:IL_4WF9_094 = 0.427IL_4V9F_083:IL_7A0S_088 = 0.4095IL_4V9F_083:IL_4WF9_106 = 0.7112IL_4V9F_086:IL_4V9F_083 = 0.3752IL_4V9F_086:IL_4V9F_086 = 0IL_4V9F_086:IL_7RQB_096 = 0.0639IL_4V9F_086:IL_4WF9_094 = 0.1069IL_4V9F_086:IL_7A0S_088 = 0.1801IL_4V9F_086:IL_4WF9_106 = 0.5553IL_7RQB_096:IL_4V9F_083 = 0.3904IL_7RQB_096:IL_4V9F_086 = 0.0639IL_7RQB_096:IL_7RQB_096 = 0IL_7RQB_096:IL_4WF9_094 = 0.0698IL_7RQB_096:IL_7A0S_088 = 0.1556IL_7RQB_096:IL_4WF9_106 = 0.5453IL_4WF9_094:IL_4V9F_083 = 0.427IL_4WF9_094:IL_4V9F_086 = 0.1069IL_4WF9_094:IL_7RQB_096 = 0.0698IL_4WF9_094:IL_4WF9_094 = 0IL_4WF9_094:IL_7A0S_088 = 0.1617IL_4WF9_094:IL_4WF9_106 = 0.5449IL_7A0S_088:IL_4V9F_083 = 0.4095IL_7A0S_088:IL_4V9F_086 = 0.1801IL_7A0S_088:IL_7RQB_096 = 0.1556IL_7A0S_088:IL_4WF9_094 = 0.1617IL_7A0S_088:IL_7A0S_088 = 0IL_7A0S_088:IL_4WF9_106 = 0.566IL_4WF9_106:IL_4V9F_083 = 0.7112IL_4WF9_106:IL_4V9F_086 = 0.5553IL_4WF9_106:IL_7RQB_096 = 0.5453IL_4WF9_106:IL_4WF9_094 = 0.5449IL_4WF9_106:IL_7A0S_088 = 0.566IL_4WF9_106:IL_4WF9_106 = 0IL_4V9F_083IL_4V9F_086IL_7RQB_096IL_4WF9_094IL_7A0S_088IL_4WF9_106Discrepancy0.000.200.400.60
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