Motif IL_02060.3 Version IL_02060.3 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_083 | 4V9F | 0.3904 | 0 | Major groove platform | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 2 | IL_4V9F_086 | 4V9F | 0.0639 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 3 | IL_7RQB_096 | 7RQB | 0.0000 | 0 | Major groove platform | 1A | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 4 | IL_4WF9_094 | 4WF9 | 0.0698 | 0 | Major groove platform | X | LSU rRNA | C | 2534 | G | 2535 | * | U | 2607 | G | 2608 | G | 2609 | cWW | cWW | chH |
| 5 | IL_7A0S_088 | 7A0S | 0.1556 | 0 | Major groove platform | X | LSU rRNA | C | 2486 | G | 2487 | * | U | 2559 | G | 2560 | G | 2561 | cWW | cWW | chH |
| 6 | IL_4WF9_106 | 4WF9 | 0.5453 | 0 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | A | 2899 | C | 2900 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 4 |
| UG*UCG | 1 |
| GG*UAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *C | 1 |
| *A | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (5)
- Major groove intercalation (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.29 | Max 0.71
Coloring options: