Motif IL_03109.1 Version IL_03109.1 of this group appears in releases 3.93 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_015 | 4LFB | 0.1739 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | ntWH | cWS | cWW | |
| 2 | IL_5J7L_018 | 5J7L | 0.1139 | 0 | C-loop | AA | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW |
| 3 | IL_8C3A_416 | 8C3A | 0.0687 | 0 | C-loop | CM | SSU rRNA | C | 441 | C | 442 | A | 443 | A | 444 | U | 445 | * | A | 458 | G | 459 | cSH | cWW | tWH | cWS | cWW |
| 4 | IL_8P9A_397 | 8P9A | 0.0000 | 0 | sR | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | * | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | |
| 5 | IL_6CZR_127 | 6CZR | 0.1529 | 0 | C-loop | 1a | SSU rRNA | G | 367 | C | 368 | A | 369 | A | 370 | U | 371 | * | A | 385 | C | 386 | cWW | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAU*AC | 2 |
| CCAAU*AG | 2 |
| ACAAU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 5 |
- Annotations
-
- C-loop (4)
- (1)
- Basepair signature
- cWW-cSH-cWS-tWH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.19
Coloring options: