Motif IL_03866.1 Version IL_03866.1 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-2 | 1-3 | 1-7 | 2-7 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_066 | 9H3G | 0.3894 | 1 | A | LSU rRNA | U | 1510 | G | 1511 | A | 1512 | A | 1513 | C | 1514 | * | G | 1522 | A | 1524 | cWW | cWS | cWW | |||||
| 2 | IL_4LFB_037 | 4LFB | 0.0000 | 1 | Minor groove platform | A | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | ||||
| 3 | IL_8B0X_040 | 8B0X | 0.0735 | 1 | Minor groove platform (H) | A | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cSH | cWW | cWS | cWW | |||
| 4 | IL_4YAZ_005 | 4YAZ | 0.9242 | 2 | R | Cyclic di-GMP-I riboswitch | G | 77 | A | 78 | A | 79 | A | 80 | U | 81 | * | A | 4 | C | 7 | cSH | cWW | ntHS | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GCA | 2 |
| UGAAC*GCA | 1 |
| GAAAU*ACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*C | 2 |
| GAA*C | 1 |
| AAA*CA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Minor groove platform (1)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-cWS-L-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.46 | Max 1.00
Coloring options: