Motif IL_04655.1 Version IL_04655.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_103 | 8C3A | 0.4502 | 1 | 1 | LSU rRNA | G | 2426 | A | 2427 | G | 2428 | G | 2429 | * | C | 2474 | U | 2475 | U | 2477 | cWW | ncWWa | cWW |
| 2 | IL_4KR6_002 | 4KR6 | 0.4523 | 8 | D | RNA (39-MER) | C | 25 | A | 26 | A | 27 | G | 28 | * | U | 8 | U | 16 | G | 18 | cWW | ncWW | cWW |
| 3 | IL_2O3V_003 | 2O3V | 0.1661 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW |
| 4 | IL_3MEI_004 | 3MEI | 0.0000 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGG*CUCU | 1 |
| CAAG*UAGUGUCCUUG | 1 |
| CGCU*AAAAG | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG*UC | 1 |
| AA*AGUGUCCUU | 1 |
| GC*AAA | 1 |
| GC*CCU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.28 | Max 0.45
Coloring options: