Motif IL_05502.1 Version IL_05502.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5ZEG_003 | 5ZEG | 0.5206 | 0 | A+B | RNA (23-mer) | G | 16 | A | 17 | A | 18 | G | 19 | * | C | 30 | 1MA | 31 | C | 32 | cWW | cWW | |
| 2 | IL_4XCO_004 | 4XCO | 0.4519 | 0 | M | SRP RNA | U | 175 | A | 176 | A | 177 | C | 178 | * | G | 152 | A | 153 | G | 154 | cWW | cWW | |
| 3 | IL_9E6Q_105 | 9E6Q | 0.4336 | 0 | 2 | 5S rRNA | U | 6 | A | 7 | A | 8 | C | 9 | * | G | 122 | A | 123 | G | 124 | cWW | cWW | |
| 4 | IL_8B0X_064 | 8B0X | 0.0000 | 0 | A | SSU rRNA | U | 1445 | A | 1446 | A | 1447 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW | |
| 5 | IL_4WF9_107 | 4WF9 | 0.3859 | 0 | Decoding loop related (H) | X | LSU rRNA | U | 2891 | G | 2892 | A | 2893 | C | 2894 | * | G | 2863 | A | 2864 | G | 2865 | cWW | cWW |
| 6 | IL_7A0S_100 | 7A0S | 0.4739 | 0 | Decoding loop related | X | LSU rRNA | G | 2846 | G | 2847 | A | 2848 | C | 2849 | * | G | 2818 | G | 2819 | C | 2820 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAC*GAG | 3 |
| GAAG*C(1MA)C | 1 |
| UGAC*GAG | 1 |
| GGAC*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 3 |
| AA*(1MA) | 1 |
| GA*A | 1 |
| GA*G | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Decoding loop related (H) (1)
- Decoding loop related (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.42 | Max 0.66
Coloring options: