Motif IL_05690.1 Version IL_05690.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3P49_012 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | G | 116 | C | 117 | A | 118 | A | 119 | A | 120 | G | 121 | * | C | 132 | C | 133 | U | 134 | A | 135 | A | 136 | C | 138 | cWW | tWH | ncWW | cWW | |
| 2 | IL_4V9F_057 | 4V9F | 0.2943 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | tWH | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAAG*CCUAAAC | 1 |
| CCAACU*ACGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAA*CUAAA | 1 |
| CAAC*CGAAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-L-R-tHS-bif-cWW
- Heat map statistics
- Min 0.29 | Avg 0.15 | Max 0.29
Coloring options: