Motif IL_06251.1 Version IL_06251.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KQY_008 | 4KQY | 0.1652 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45||||4_555 | A | 46||||4_555 | A | 47||||4_555 | C | 48||||4_555 | * | G | 77||||4_555 | U | 78||||4_555 | G | 79||||4_555 | cWW | ntSH | cSH | cWW | |
| 2 | IL_4KQY_003 | 4KQY | 0.1652 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | cSH | cWW | |
| 3 | IL_4AOB_008 | 4AOB | 0.1057 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44||||7_555 | A | 45||||7_555 | A | 46||||7_555 | C | 47||||7_555 | * | G | 56||||7_555 | U | 57||||7_555 | G | 58||||7_555 | cWW | tSH | ncSH | cWW | |
| 4 | IL_4AOB_003 | 4AOB | 0.1057 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW | |
| 5 | IL_5FJC_003 | 5FJC | 0.0718 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | |
| 6 | IL_4OQU_001 | 4OQU | 0.0000 | 0 | Major groove platform with extra pair | A | SAM-I/IV riboswitch | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW | |
| 7 | IL_3V7E_003 | 3V7E | 0.1155 | 0 | Major groove platform with extra pair | C | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 88 | U | 89 | G | 90 | cWW | tSH | ncSH | cWW | |
| 8 | IL_4Y4O_268 | 4Y4O | 0.2893 | 0 | 2A | LSU rRNA | C | 2456 | U | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | G | 2495 | cWW | ncWW | ntSH | cWW | ||
| 9 | IL_4V8P_251 | 4V8P | 0.4583 | 0 | Major groove platform with extra pair (H) | D1 | LSU rRNA | G | 2386 | C | 2387 | G | 2388 | G | 2389 | * | U | 2974 | A | 2975 | C | 2976 | cWW | cWW | cSH | cWW | |
| 10 | IL_4LFB_064 | 4LFB | 0.9165 | 2 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 7 |
| CUGA*UGG | 1 |
| GCGG*UAC | 1 |
| CGGGAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 7 |
| UG*G | 1 |
| CG*A | 1 |
| GGGA*A | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (7)
- (2)
- Major groove platform with extra pair (H) (1)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.35 | Max 0.99
Coloring options: